qtlSumm {MetaNetwork}R Documentation

Example QTL summary report

Description

Example of the QTL summary for each trait as data frame that can be produced by functions qtlSummary or MetaNetwork.

> data(qtlSumm)
> qtlSumm[1:5,]
traitName QTLchr QTLmk QTLleftcm QTLpeakcm QTLrightcm logP
1 3-Hydroxypropyl 4 GA1 3.6640 9.027 11.1280 11.1
2 3-Hydroxypropyl 5 GH.117C 32.4675 35.356 37.6390 13.5
3 4-Hydroxybutyl 3 DF.77C 0.0000 0.000 9.4365 3.9
4 4-Hydroxybutyl 4 GA1 3.6640 9.027 16.5810 4.5
5 4-Methylsulfinylbutyl 5 GH.117C 32.356 35.356 37/6390 16.3


(cont'd) VarP1 VarP2 additive
(1 cont'd) 0.0 26.0 -2784.0
(2 cont'd) 0.0 31.2 -3088.8
(3 cont'd) 10.4 1.3 -16.9
(4 cont'd) 5.5 6.6 28.0
(5 cont'd) 12.0 34.2 61.3

Usage

data(qtlSumm)

Format

A data frame.

Author(s)

Jingyuan Fu <j.fu@rug.nl>, Morris Swertz <m.a.swertz@rug.nl>, Ritsert Jansen <r.c.jansen@rug.nl>

Source

Keurentjes JJB, FU J, de vos CHR, Lommen A, Hall RD, Bino RJ, van der Plas LHW, Jansen RC, Vreugdenhil D and Koornneef M. The genetics of plant metabolism. Nature Genetics (2006) 7: 842-849.

References

Fu J, Swertz MA, Keurentjes JJB, Jansen RC. MetaNetwork: a computational tool for the genetic study of metabolism. Nature Protocols (2007).

http://gbic.biol.rug.nl/supplementary/2007/MetaNetwork

See Also

Use qtlSummary to generate qtlSumm.
Use MetaNetwork to produce this dataset as part a genetic analysis protocol on metabolites.


[Package MetaNetwork version 1.0-0 Index]