A computational protocol for the genetic study of metabolic networks


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Documentation for package `MetaNetwork' version 1.0-0

Help Pages

corrSecondOrder Example correlation data
corrZeroOrder Example correlation data
createCytoFiles Write Cytoscape visualization files
findMultiplePeaks Cluster multiple mass peaks based on correlation and mass
genotypes Example genotype data
loadData Load data from csv files
markers Example marker data
MetaNetwork genetic study of metabolites and network reconstruction
MetaNetwork-package MetaNetwork package
multiplePeaks Example Multiple Peaks report
peaks Example peak data
peaks2 Example peak data
qtlCorrSecondOrder Calculate the second-order correlation
qtlCorrThreshold Estimate correlation threshold
qtlCorrZeroOrder Calculate the zero-order correlation
qtlFDR Estimate QTL thresholds for false discovery rate (FDR)
qtlMapTwoPart QTL test statistic using two-part model
qtlPlot Plot QTL profiles
qtlProfiles Example qtl profiles
qtlSumm Example QTL summary report
qtlSummary Summarize QTL effects
qtlSupportInterval Estimate QTL support interval
qtlThreshold Estimate QTL significance threshold.
traits Example traits data
traits2 Example traits data