markers {MetaNetwork}R Documentation

Example marker data

Description

Example matrix of markers (rownames) for Arabidopsis thaliana and their chromosome numbers (column 1) and centi-Morgan (cM, column 2) positions, ordered by position:

> data(markers)
> markers[1:5,]

chr cM
PVV4 1 0.0
AXR-1 1 6.4
HH.335C-Col 1 10.8
DF.162L/164C-Col 1 12.9
EC.480C 1 15.059

Usage

data(markers)

Format

117 rows of markers and two columns for chromosome number and centi-Morgan position

Author(s)

Jingyuan Fu <j.fu@rug.nl>, Joost Keurentjes <Joost.Keurentjes@wur.nl>, Morris Swertz <m.a.swertz@rug.nl>, Ritsert Jansen <r.c.jansen@rug.nl>

Source

Keurentjes JJB, FU J, de vos CHR, Lommen A, Hall RD, Bino RJ, van der Plas LHW, Jansen RC, Vreugdenhil D, and Koornneef M. The genetics of plant metabolism. Nature Genetics (2006) 7: 842-849.

References

Fu J, Swertz MA, Keurentjes JJB, Jansen RC. MetaNetwork: a computational tool for the genetic study of metabolism. Nature Protocols (2007).

http://gbic.biol.rug.nl/supplementary/2007/MetaNetwork

See Also

Use MetaNetwork for automated analysis of this data set as part a genetic analysis protocol on metabolites.


[Package MetaNetwork version 1.0-0 Index]