qtlSumm {MetaNetwork} | R Documentation |
Example of the QTL summary for each trait as data frame that can be produced
by functions qtlSummary
or MetaNetwork
.
> data(qtlSumm) > qtlSumm[1:5,]
traitName | QTLchr | QTLmk | QTLleftcm | QTLpeakcm | QTLrightcm | logP | |
1 | 3-Hydroxypropyl | 4 | GA1 | 3.6640 | 9.027 | 11.1280 | 11.1 |
2 | 3-Hydroxypropyl | 5 | GH.117C | 32.4675 | 35.356 | 37.6390 | 13.5 |
3 | 4-Hydroxybutyl | 3 | DF.77C | 0.0000 | 0.000 | 9.4365 | 3.9 |
4 | 4-Hydroxybutyl | 4 | GA1 | 3.6640 | 9.027 | 16.5810 | 4.5 |
5 | 4-Methylsulfinylbutyl | 5 | GH.117C | 32.356 | 35.356 | 37/6390 | 16.3 |
(cont'd) | VarP1 | VarP2 | additive |
(1 cont'd) | 0.0 | 26.0 | -2784.0 |
(2 cont'd) | 0.0 | 31.2 | -3088.8 |
(3 cont'd) | 10.4 | 1.3 | -16.9 |
(4 cont'd) | 5.5 | 6.6 | 28.0 |
(5 cont'd) | 12.0 | 34.2 | 61.3 |
data(qtlSumm)
A data frame.
Jingyuan Fu <j.fu@rug.nl>, Morris Swertz <m.a.swertz@rug.nl>, Ritsert Jansen <r.c.jansen@rug.nl>
Keurentjes JJB, FU J, de vos CHR, Lommen A, Hall RD, Bino RJ, van der Plas LHW, Jansen RC, Vreugdenhil D and Koornneef M. The genetics of plant metabolism. Nature Genetics (2006) 7: 842-849.
Fu J, Swertz MA, Keurentjes JJB, Jansen RC. MetaNetwork: a computational tool for the genetic study of metabolism. Nature Protocols (2007).
http://gbic.biol.rug.nl/supplementary/2007/MetaNetwork
Use qtlSummary
to generate qtlSumm
.
Use MetaNetwork
to produce this dataset as part a genetic
analysis protocol on metabolites.